Virology.ca Tools


Here is a list of our tools as well as a brief description.

If you like what we do please donate.

VOCS – search and extract genome, gene and protein data from the database. VGO – an easy-to-use Java genome browser.
Base By Base – search and extract genome, gene and protein data from the database.

JDotter – generate dot-plots for large genome or protein sequences

Sequence Searcher Рsearch for protein and DNA motifs GATU (Genome Annotation Transfer Utility) - annotates a genome based on closely related reference genomes
STS – Java program for building and exploring indexes of small or large amounts of DNA data. NAP (Nucleotide Amino Acid Alignment) – global DNA/protein alignments without penalizing terminal gaps
GFS (Genome-based Fingerprint Scanning) – maps peptide mass fingerprint data into raw genomic sequences GraphDNA – DNA Skew Graphing

CodonStatistics – browse statistical information on one or more genomes
Hydrophobicity – graph amino acid hydrophobicity/hydrophilicity

eGATU – allows users to transfer annotations to an input genome without having to specify a reference

JFreq (Java Word Frequences) – finds frequencies of short nucleotide sequences

 

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