VBRC Publications


1)  Chris Upton’s publication at Google Scholar

2) Manuscripts describing the VBRC Tools  at Google Scholar (includes citations)

 


Refereed conference proceedings (considered full publications in Computer Science)

Barsky, M., U. Stege, A. Thomo, C. Upton. 2006.
A New Algorithm for Fast All-Against-All Substring Matching Proc. of String Processing and Information Retrieval SPIRE’06 Glasgow, Scotland.

Barsky, M., U. Stege, A. Thomo, C. Upton. 2007.
Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings. IEEE 7th International Symposium on Bioinformatics and BioEngineering (BIBE07), pp. 327-333 IEEE. Boston, USA.

Barsky, M., U. Stege, A. Thomo, C. Upton. 2008. A new method on indexing genomes using on-disk suffix trees. ACM 17th Conference on Information and Knowledge Management. Napa Valley, California USA.

Barsky, M., U. Stege, A. Thomo, C. Upton. 2009. Suffix trees for very large genomic sequences. ACM 18th Conference on Information and Knowledge Management. Hong Kong, China.

 

 

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